Gregor Sturm
Gregor Sturm
- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [ ]...
- [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated - [x] There is example tool output for tools in the repository or...
Most functions in squidpy seem to be centered around analyzing a single sample. For me, in the context of clinical trials, it would be important to compare between sample groups....
### Describe the bug **context** When including a plot in a jupyter notebook, mystnb renders it way larger than it appears in the jupyter notebook. **expectation** Plot sizes between the...
Muon should adopt the cookiecutter template for all its benefits. Since there are few PRs open, the disruption should be minimal.
**Is your feature request related to a problem? Please describe.** In scirpy, I have a custom extension of "pl.embedding" that plots [clonotype networks](https://scverse.org/scirpy/latest/generated/scirpy.pl.clonotype_network.html#scirpy.pl.clonotype_network). Similar to the `pl.embedding` functions in muon...
### Please make sure these conditions are met - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on...
### Please describe your wishes and possible alternatives to achieve the desired result. Since #504, AnnData supports nullable int and bool columns in `obs`. Support for strings is planned in...
- [x] Closes #1035 - [x] Follow up of #1040 - [ ] Release note added (or unnecessary)
It would be nice to link to community tutorials in the scirpy documentation, e.g. * [mvTCR](https://github.com/leuschjanphilipp/mvTCR/tree/master/tutorials) * locus reannotation with Dandelion * scirpy/Dandelion interoperability