David Eccles (gringer)

I'll repeat that it's really not a great idea to use this old software for processing new data. It seems odd to *need* UNIX timestamp values (and derived values) for...

As with all github projects, if you think you can do better, feel free to fork the project. If you want to see what other people have done to improve...

Native support for `oarfish` being added to `tximeta` would be great. Thanks for explaining this. I understand [the issues](https://xkcd.com/927/) with different user bases, I just had a faint hope that...

The docs say that it is not possible to compile from downloaded .zip source code, but it should work if the repository is cloned; have you tried that?

FWIW, the changes in PrusaSlicer for the NonPlanar functionality can be found here: https://github.com/EiNSTeiN-/PrusaSlicer/commit/22c42b9844bf54728be54fd029d06a20fddd01bd I've attached a diff of those changes, as well as the included test STL file (should...

I've found issues with Canu when trying to carry out population genome sequencing; there's just too much population variation to construct long consensus contigs.

I can't get it working with our direct RNA run either, looking at modified bases: ``` (base) gringer@musculus:/mnt/p2_temp/2024-05-21_dRNA_seq_MSF001$ x=2024-05-21_dRNA_seq_MSF001; time ~/install/ont/dorado/bin/dorado basecaller -v --no-trim -b 160 -r --device cuda:0 --emit-sam...

A smaller chunksize seems to have fixed most of the problem; it's no longer erroring out in the first minute... but it did dump out before completing everything: ``` (base)...

This seems to be an issue with the very last read in the pod5 file. When I subset to 200, 2000, or 10,000 reads, it will call the file with...

@HalfPhoton Yes, I can do this. I've got signal data from 10 reads that I can share; the pod5 file size is about 360 kB. Please let me know how...