Greg Von Kuster

@mvdbeek Yeah, that's what I was wondering, so thanks! Building the index seems to be pretty fast. Here is the time to build the index for 2 different references, the...

By the way, I ran this on my Linux desktop, not a high-end compute node.

The BBmap package is already available in the bioconda channel. Also, the license for the tools is here https://github.com/BioInfoTools/BBMap/blob/master/license.txt, and is open source based on conditions. Here is the text....

First tool - BBMap is here https://github.com/galaxyproject/tools-iuc/pull/3993

callvariants is now available. https://github.com/galaxyproject/tools-iuc/pull/4006

bbduk tool is here https://github.com/galaxyproject/tools-iuc/pull/4017

> @gregvonkuster can you please help here? Thanks a bunch! @pimarin I'm coming in very late to this conversation, so what is it, in particular, that you need help with?...

> Hi @gregvonkuster ! > First, how can I use planemo test with your configuration to test on my local machine ? I failed to have the same output as...

@jmchilton Yes, I agree that the support for planemo workflow testing would be ideal. I've looked at it in the past but was not able to get it working. However,...

Ah, this is good to know. However, @nekrut did tell me this recently, so I'll double check with him.