Greg Von Kuster

> Then we may be able to set the path(s) during the DM run? I'm not sure we can make this work. See the current tool help section here's an...

> * make the config path be configurable. > * create a mock config file for each tool run, seems to be a simple json file that could be created...

> don't think so. the code (at least in parts) supports setting a location: > https://github.com/WrightonLabCSU/DRAM/blob/a5f225718c5ff312ec8ccaefbb61daaa12452705/mag_annotator/database_handler.py#L33 But the location is set within the code itself: ``` def get_config_loc(): return path.abspath(resource_filename('mag_annotator',...

Ah, I thought you were saying we could make things work without fixing anything upstream. I've opened this issue https://github.com/WrightonLabCSU/DRAM/issues/208.

> Where is this data table used? I've started a new suite of tools that will eventually consist of wrappers for each of these https://ecogenomics.github.io/GTDBTk/commands/index.html. The first tool will be...

Can this be merged?

Awesome! Thanks!

I'll work on these - please let me know if work has already started on them.

Here is some text from the BBMap docs here https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/ This implies that we'll need a new BBmap data manager tool to install indexes, so just want to confirm that...

@xinhuang66 it looks like you're using an email client or something to post comments here, and this is creating a lot of unwanted signature text as well as the initial...