gregorydonahue

Hello - I'm trying to run basepairmodels on the provided CTCF chIP-seq data from ENCODE. I got to the model training step, when the job failed with: Traceback (most recent...

Compatibility with bpnet-refactor

1

Hello, I have recently run the bpnet-refactor workflow and obtained SHAP attribution scores, which I would now like to load into TF-MoDISco. I'm having some trouble seeing how to do...

Calling hits with FiNeMo / marginalize?

2

Hi Jacob, Thanks for all your help so far - I was able to generate negatives for my ATAC-seq data using bpnet, and then ran the following successfully: chrombpnet fit...