Getting error with StringTie

[nayan-bhowmik]

Hello!

I am getting the following error for stringtie command: stringtie -o outputfile -G annotationfile bamfile "Error: no valid ID found for GFF record Aborted (core dumped)"

I am using the gtf file downloaded from the ncbi: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002263795.3/

Any help would be highly appreciated!

Thanks, Nayan

[nayan-bhowmik]

I have tried with the gff version 3 file; now it is working.