stringtie icon indicating copy to clipboard operation
stringtie copied to clipboard

Published 20 hours ago • verified publisher icon gpertea

Must the GTF file used by stringtie be the same as the GTF file used by aligner?

Open ZHIDIHUAYUAN opened this issue 3 years ago • 0 comments

Hi, I have bam files aligned with STAR 2- PASS using the GENCODE fasta file and GENCODE annotation file. Then I want to assemble transcripts using the Refseq annotiation because there are some attributions I need.

Can the GTF files used by stringtie be different from the one used by STAR?

Thank you.

ZHIDIHUAYUAN avatar Jul 14 '21 03:07 ZHIDIHUAYUAN