gpertea
How do you convert MSTRG.number to Gene name or Gene symbol?
Dear,
I need to convert MSTRG.number into Gene name or Gene Symbol to be able to run on an R script that allows me to perform differential gene expression analyzes. From what I have been able to understand one method could be with biomaRt the R package, however I am not very practical and therefore I preferred to use the graphical interface, to no avail. Can you help me? If there are also solutions that involve the use of RStudio or R are fine, of course if there was a way to use the graphical interface in this problem we would like it. Thank you
Jacopo
At the end of the Differential expression analysis section of the StringTie manual there is a note about using the IsoformSwitchAnalyzeR package for something like that, hopefully that can help ?
Sorry for the late reply. I have downloaded IsoformSwitchAnalyzeR however the version of R 4.1 which is required, for the operating system I have, mac os, is unstable. While for windows it seems not to have come out so I couldn't even try with a virtual machine. How can I do it alternatively? Thank you
Jacopo
Il 17/02/2021 17:16 Geo Pertea <[email protected]> ha scritto: At the end of the Differential expression analysis http://ccb.jhu.edu/software/stringtie/index.shtml?t=manual#de section of the StringTie manual there is a note about using the IsoformSwitchAnalyzeR https://bioconductor.org/packages/devel/bioc/html/IsoformSwitchAnalyzeR.html package for something like that, hopefully that can help ? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/gpertea/stringtie/issues/321#issuecomment-780670850 , or unsubscribe https://github.com/notifications/unsubscribe-auth/AOPVMVHBA2TAIGNNX2KAW4TS7PTXRANCNFSM4XYTE33A .