gffread
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pseudo feature not filtered with `--no-pseudo` and `-F` options together
Normally with gffread I've found that using --no-pseudo
and -F
that --no-pseudo
still filters out all features with a pseudo=true
attribute. But for this example:
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/874/185/GCA_000874185.2_ViralProj20757/GCA_000874185.2_ViralProj20757_genomic.gff.gz
This feature with pseudo=true
does not get filtered out for this feature:
AJ278322.4 EMBL CDS 9713 14527 . + 0 Parent=gene-ORF15;Note=putative product gp15b;gbkey=CDS;gene=ORF15;pseudo=true;transl_table=11