gffcompare
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GFFCompare ".tracking" file has zero value in<FPKM>|<TPM>|<cov> columns
Hello,
When I compared single merged.stringtie.assembly.gtf
(generated by stringtie merge function) file with known annotation gtf file, I found each line in
qJ:<gene_id>|<transcript_id>|<num_exons>|<FPKM>|<TPM>|<cov>|<len>
q1:MSTRG.1|MSTRG.1.1|3|0.000000|0.000000|0.000000|3357
Thanks