gff file and the XLOC numbers are not ordered correctly

[dosshra]

Hello I merged two files using this code: gffcompare -i ~/wewano/list In the results gff file, the order of the features is not always following the coordinates. See below:

Chr1A zav2 exon 609402882 609403092 . + . transcript_id "TCONS_00017161"; gene_id "XLOC_003158"; exon_number "4"; Chr1A zav2 transcript 42545 46080 . - . transcript_id "TCONS_00017162"; gene_id "XLOC_003159"; oId "XM_044596291.1 .mrna1"; tss_id "TSS4884"; num_samples "1"; It seems like it ended Chr1A and then started again. See attached file. Thank you

gffcmp.combined.gtf.gz