Damien Goutte-Gattat
Damien Goutte-Gattat
> Do we need another mappings folder just off the repo root which contains the generated mappings in ODK? That’s a discussion to be had on the ODK repo. I...
With #3249, the “meta“ mapping set will be available as a release artefact under the name `Uberon.sssom.tsv`. With the default PURL redirection already in place, that artefact will be accessible...
> we have 3 terms that appear to be useless vestiges of the heady days of over-formalisation […] these strange sounding terms might be better colloquially called conception, birth, death....
Yes. And I concur with @dosumis ’s preliminary notes above: Most, if not all, of the unsats seem to be caused by the fact that HBA’s terms for sulci are...
OK, I’ll leave this issue here open until the changes have been done in HBA, just in case there are _other_ unsats beyond the ones caused by the “sulcus” terms.
> bridge files should use updated PURL The MBA and DMBA bridge files are now fetched directly from https://github.com/brain-bican/mouse_brain_atlas_ontology and https://github.com/brain-bican/developing_mouse_brain_atlas_ontology, so they already use whatever PURLs are set upstream...
A large part of the unsats were fixed with https://github.com/brain-bican/human_brain_atlas_ontology/pull/1, but I still count ~120 remaining unsats. Many of them involve cranial nerves. * [cranial nerves (HBA)](https://purl.brain-bican.org/ontology/hbao/HBA_9299) is [part of](http://purl.obolibrary.org/obo/BFO_0000050)...
Of note, FlyBase has switched (for a few months already) to maintaining and providing its mappings with Uberon/CL under the forms of a SSSOM mapping set, and the idea with...
Regarding the question of the “source of truth” for the mappings to each foreign ontology: I think that we should have an agreement with each foreign ontology as to which...
Of note, we should keep in mind that there is also the case of foreign ontologies that provide so-called “complex mappings” – mappings that for some reason are too complex...