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gosling-lang
A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
Just learned of gosling today via twitter. I used to work at `heavy.ai` on large-scale dataviz and have been pretty close to the Vega/VegaLite ecosystem for a few years, including...
The server is https://github.com/manzt/hg is largely copied from here. It would be good to extract this into its own reusable package.
I think we can at least make the `width` and `height` optional so that users do not have to specify them when users use `responsiveSize`. But, yes, it is somewhat...
There appear to be temperamental issues with loading the JS to power the **gos** visualization in Jupyter Notebooks. It is difficult to debug due to the browser cache and (hidden)...
It is easiest to reuse a `gos.Track` instance for subsequent partial track definitions. This is fine, but it does lead to larger JSON that could be avoided. Similar to Altair,...
In the gosling website, there is an example of setting up visibility based on `zoomLevel` instead of `width|height.` If I try to set the visibility by passing `zoomLevel` to the...
Just a matter of priorities. We have a [separate repo/package](https://github.com/gosling-lang/gosling-widget) from the Gosling Jupyter Widget because the build complexity was quite a bit. However, anywidget should make it feasible to...
Hi! I'm running this simple script to visualise bigwig file: ```py import gosling as gos data = gos.bigwig( url=‘https://s3.amazonaws.com/gosling-lang.org/data/ExcitatoryNeurons-insertions_bin100_RIPnorm.bw’, column= ‘position’, value=‘peak’ ) track = gos.Track(data).mark_area().encode( x=gos.X(‘position:G’), y=gos.Y(“peak:Q”, axis=“right”), color=gos.value(“royalblue”),...
I tested out `gosling[all]==0.1.1` since I was going to update the tutorial. Interestingly, scroll to zoom does not behave as expected in VSCode on my machine (OSX Sonoma, VSCode 1.84.2)....
Hi, I am trying to use gos to visualize a local bed file exactly like the OP in #120 and am also having trouble. I am working on a python...
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A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.