best

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the command 'cargo install --path. ' reported an error

3

When I was trying to deploy Best, I encountered an installation problem. Following this installation process, I successfully installed Rust, but I was running the command: cargo install --path. The...

huishao007

Should at least document: * Per kbp, identity, QV, etc. formulas * How intervals are handled * How most stats are relative to the reference * How secondary alignments are...

Daniel-Liu-c0deb0t

required arguments not recognized when supplying --intervals-bed

3

Program works great when I run without a BED file: `${BESTPATH}/best sorted_pds5c_Tube01_L01.bam GCF_000001735.3_TAIR10_genomic_softmasked.fna.gz pds5c_Tube01_L01_best` But when I add a BED file for partitioning results by regions: `${BESTPATH}/best --intervals-bed GCF_000001735.3_TAIR10_genomic_softmasked.bed sorted_pds5c_Tube01_L01.bam...

avril-m-harder

Looks like a great tool, any chance you can make it available via conda?

1

Looks like a great tool, any chance you can make it available via conda? #2

AntonioBaeza

Work with bam files without q-scores

1

Currently it seems quality scores in the bam files are required. There are use cases where the mapping is performed with fasta files and there are no quality scores recorded...

angelovangel

Clarification on GC Content Increment for G/C Reference Deletions

1

Hello, Firstly, I want to express my appreciation for this project! I’m currently learning Rust for bioinformatics, and your codebase is one of the best practical tutorials I’ve encountered. However,...

xianyu0623