slip
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google-research
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
right now the repo is flat: create setup.py file and directory structure so we can do "from slip import _"
Updated potts_model.py to partition landscape based on specified sites of interest
The scripts for generating gridsearches should be refactored such that grids are stored separately from the grid launch scripts.
In the current examples of mogwai training + saving (e.g. https://github.com/songlab-cal/mogwai/blob/main/examples/gremlin_train.ipynb), after saving the model and attempting to load it in SLIP, the user gets an error indicating that the...
It looks like random.RandomState has been sunset https://numpy.org/doc/stable/reference/random/legacy.html, and np.random.Generator is the new interface. A future PR can move them all over. Then, instead of subsetting indexes and selecting, we...
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SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.