Docker errors image not found

[ikun821]

Hi all,

The new dockerfile works fine when building the docker image. However, when I run the docker run run_docker.py, I got an error saying the docker errors image not found. Here is the code and error message:

python3 docker/run_docker.py --fasta_paths=/home/ikun/Documents/alphafold/NTD.fasta --max_template_date=2022-01-01 --model_preset=monomer --db_preset=full_dbs --data_dir=/home/ikun/Documents/database --output_dir=/home/ikun/Documents/output I0724 13:49:02.621941 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/alphafold -> /mnt/fasta_path_0 I0724 13:49:02.622105 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/uniref90 -> /mnt/uniref90_database_path I0724 13:49:02.622197 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/mgnify -> /mnt/mgnify_database_path I0724 13:49:02.622262 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database -> /mnt/data_dir I0724 13:49:02.622329 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/pdb_mmcif/mmcif_files -> /mnt/template_mmcif_dir I0724 13:49:02.622401 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/pdb_mmcif -> /mnt/obsolete_pdbs_path I0724 13:49:02.622477 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/pdb70 -> /mnt/pdb70_database_path I0724 13:49:02.622550 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/uniref30 -> /mnt/uniref30_database_path I0724 13:49:02.622609 140341025580864 run_docker.py:116] Mounting /home/ikun/Documents/database/bfd -> /mnt/bfd_database_path Traceback (most recent call last): File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/client.py", line 268, in _raise_for_status response.raise_for_status() File "/home/ikun/anaconda3/lib/python3.10/site-packages/requests/models.py", line 1021, in raise_for_status raise HTTPError(http_error_msg, response=self) requests.exceptions.HTTPError: 404 Client Error: Not Found for url: http+docker://localhost/v1.43/containers/create

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/models/containers.py", line 811, in run container = self.create(image=image, command=command, File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/models/containers.py", line 870, in create resp = self.client.api.create_container(**create_kwargs) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/container.py", line 430, in create_container return self.create_container_from_config(config, name) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/container.py", line 441, in create_container_from_config return self._result(res, True) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/client.py", line 274, in _result self._raise_for_status(response) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/client.py", line 270, in _raise_for_status raise create_api_error_from_http_exception(e) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/errors.py", line 31, in create_api_error_from_http_exception raise cls(e, response=response, explanation=explanation) docker.errors.ImageNotFound: 404 Client Error for http+docker://localhost/v1.43/containers/create: Not Found ("No such image: alphafold:latest")

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/client.py", line 268, in _raise_for_status response.raise_for_status() File "/home/ikun/anaconda3/lib/python3.10/site-packages/requests/models.py", line 1021, in raise_for_status raise HTTPError(http_error_msg, response=self) requests.exceptions.HTTPError: 404 Client Error: Not Found for url: http+docker://localhost/v1.43/images/create?tag=latest&fromImage=alphafold

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/ikun/Documents/alphafold/docker/run_docker.py", line 267, in app.run(main) File "/home/ikun/anaconda3/lib/python3.10/site-packages/absl/app.py", line 312, in run _run_main(main, args) File "/home/ikun/anaconda3/lib/python3.10/site-packages/absl/app.py", line 258, in _run_main sys.exit(main(argv)) File "/home/ikun/Documents/alphafold/docker/run_docker.py", line 237, in main container = client.containers.run( File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/models/containers.py", line 814, in run self.client.images.pull(image, platform=platform) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/models/images.py", line 446, in pull pull_log = self.client.api.pull( File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/image.py", line 430, in pull self._raise_for_status(response) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/api/client.py", line 270, in _raise_for_status raise create_api_error_from_http_exception(e) File "/home/ikun/anaconda3/lib/python3.10/site-packages/docker/errors.py", line 31, in create_api_error_from_http_exception raise cls(e, response=response, explanation=explanation) docker.errors.ImageNotFound: 404 Client Error for http+docker://localhost/v1.43/images/create?tag=latest&fromImage=alphafold: Not Found ("pull access denied for alphafold, repository does not exist or may require 'docker login': denied: requested access to the resource is denied")

After adding sudo before the command, I got this:

sudo python3 docker/run_docker.py --fasta_paths=/home/ikun/Documents/alphafold/NTD.fasta --max_template_date=2022-01-01 --model_preset=monomer --db_preset=full_dbs --data_dir=/home/ikun/Documents/database --output_dir=/home/ikun/Documents/output [sudo] password for ikun: Traceback (most recent call last): File "/home/ikun/Documents/alphafold/docker/run_docker.py", line 22, in from absl import app ModuleNotFoundError: No module named 'absl'

I have tried reinstalling everything from the start and still had the same error. And restarting docker and run docker login before running run_docker.py also doesn't work.

[meerveld96]

I'm having exactly the same problem, happy to hear possible solutions.

Traceback (most recent call last): File "docker/run_docker.py", line 22, in from absl import app ModuleNotFoundError: No module named 'absl'

[C10H]

I'm having exactly the same problem, happy to hear possible solutions.

Traceback (most recent call last): File "docker/run_docker.py", line 22, in from absl import app ModuleNotFoundError: No module named 'absl'

You need to use pip to install absl-py and docker

[meerveld96]

Thanks, that solves my problem.