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Published 20 hours ago • verified publisher icon google-deepmind

Extracting single representation from predictions

Open obada-alzoubi opened this issue 3 years ago • 2 comments

I would like to extract single representation from AlphaFold prediction. I tried to use masked_msa (not sure if it the correct field) from result_model_1.pkl . I think what I should get is something like number of residues x 384 from reading the paper. I got a totally different dimensions.

obada-alzoubi avatar May 19 '22 16:05 obada-alzoubi

Hi, you can use this repo, developed by me, to produce single representations : )

yuxin212 avatar Jun 19 '22 17:06 yuxin212

I have the same qeustion. Can we extract features without using the MSA block?

xinyu-dev avatar Oct 08 '22 18:10 xinyu-dev