Ryan Golhar

If node doesn't have a DNS name (such as in a VPC) or public IP, the private ip address is all the is available.

Would be nice to have the toolkit automatically recognize gzip compressed files as input instead of having to uncompress and pipe to fastx toolkit.

docker_extract.py is not handling relative directories very well.

1

Hi - I'm curious how up to date and stable this package is. It seems like parsing a CWL 1.2 workflow works in some ways but not others. I can...

apt-get install python3 installs python 3.5. Some of the packages I'm using require python 3.6, at a minimum.

``` $ ./wes-docker.sh + python setup.py sdist running sdist running egg_info creating wes_service.egg-info writing wes_service.egg-info/PKG-INFO writing dependency_links to wes_service.egg-info/dependency_links.txt writing entry points to wes_service.egg-info/entry_points.txt writing requirements to wes_service.egg-info/requires.txt writing top-level...

ModuleNotFoundError: No module named 'jsonschema.compat'

2

Folllowing the install instructions in README.md, I get this error. ``` python3 -m venv ga4gh-python-env source ga4gh-python-env/bin/activate pip install wes-service wes-client --info Traceback (most recent call last): File "/Users/golharr/workspace/ga4gh/ga4gh-python-env/bin/wes-client", line...

ImportError: cannot import name 'FileStorage'

7

Following the docs shown on https://pypi.org/project/wes-service/, I just installed via 'pip install wes-service' into a python 3.6 virtual env. When I run 'wes-server' I get the error: ``` $ wes-server...

User Guide: Capturing Standard Output should include example of renaming output file

6

http://www.commonwl.org/user_guide/05-stdout/index.html The example shows how to capture stdout for a single tool to be output.txt. This example should also show how to rename the output file, or else having multiple...

Docs need more work

1

Not to be critical, but I've been trying to get this module to work with my app and my orgs SSO. The docs in here are very minimal and a...

external links to anchor in another markdown file in same repository

2

I have a README.md that contains a link to another markdown file within the same repo: ``` [Link to other file](OTHER_FILE.md) ``` The OTHER_FILE.md is part of the same repo....