goldenflaw

Yes, thanks On Thu, Jul 23, 2020 at 1:41 AM Boxiang Liu wrote: > Got it. Sorry for the late reply! > > Yes. I am calling sQTLs. I am...

Dear Fahri, We have moved away from filter_cs.py and now use regtools. It should be described in some parts -- and apologies for not being consistent all throughout the manual....

Yes, the results are not identical, but there is no reason to believe that this would create inconsistent biological conclusions. Best, Yang On Thu, Feb 20, 2020 at 9:49 AM...

Dear Fahri, Thanks for this. This is very useful. The short answer is that this is not totally unexpected, but the decrease in the number of clusters/junctions that pass filtering...

I would focus on finding junctions that are not in one (regtools) but are in filter_cs, and then find reads that support these junctions. Do these look weird for some...