Gökçen Eraslan

One idea is to make `-f` parameter of souporcell equal to the `-x` parameter of hisat2 if --aligner is HISAT2.

OK, sounds good.

Thanks so much!

I had problems with the old links too, on some machines they worked on some others they didnt. This is why I suggested another service. I haven't tried these links...

Btw I think there is a mismatch between the chromosome names in vcf header and vcf body: vartrix prints a warning about it: ``` [W::vcf_parse] Contig '1' is not defined...

No problem, I just wanted to let you know in case you are not aware. I also think it's not a big deal, this is why I didn't file a...

It's cross entropy (i.e. neg. log likelihood of multinomial where categories are words), where `preds` are already log transformed in the decode function. It's implicitly given in the first part...

Could this be related to isotropic Gaussian prior over theta logits (as in typical VAEs)?

Here is the error I get when I use the convert function in Seurat and the develop branch of loomR: ```r Warning message in loomR::create(filename = filename, data = [email protected][,...

`apt-cache show libhdf5-dev`: ``` Package: libhdf5-dev Architecture: amd64 Version: 1.10.0-patch1+docs-4build2 Priority: optional Section: universe/libdevel Source: hdf5 Origin: Ubuntu Maintainer: Ubuntu Developers Original-Maintainer: Debian GIS Project Bugs: https://bugs.launchpad.net/ubuntu/+filebug Installed-Size: 11081 Provides:...