Jellyfish
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gmarcais
A fast multi-threaded k-mer counter
Hi Guillaume, We have a number of Sailfish and Salmon users asking for us to directly support gzipped fasta/q files. Right now, the only way to achieve this online (i.e....
I would really like to have a Windows version of this software. My development environment is Windows (no gcc or cygwin) and the Linux machines I use I do not...
Hi, I tried to install the latest jellyfish by downloading the release from git. However, I could not find any executable: configure that I can use to invoke the ./configure...
I'm trying to use Jellyfish on a system where I can't mess with the system, so I'm trying to do a local installation. Unfortunately, the following configure call fails: ```...
I was compiling Jellyfish with `autoreconf`, `./configure` and `make`, and yaggo was not installed -- neither of these commands indicated a missing dependency. `make` gave me this ambiguous error: `make:...
Dear Guillaume Marcais, I am Ram, I have recently started to work on metagenomics analysis. I would like to thank you and your research team for coming up with a...
I've come across a few use cases for Jellyfish that were not practical with the current executable, so I wrote the functionality as a seperate program, using Jellyfish as a...
When merging databases that have been created with the -C flag, the resulting database both behaves and is listed as a non-canonical database.
