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verified publisher icon gmarcais

Genome masking

Open xbarvazx opened this issue 4 years ago • 0 comments

Hi,

Is it possible to use jellyfish for masking, similar to bbduk (which is limited to 31mer)? The idea is to find kmers that repeat more than once in the genome and mask them. Or do you know of downstreem tools that can use jellyfish count output for masking?

Best, Raz

xbarvazx avatar Oct 07 '21 12:10 xbarvazx