Karthik

Results 12 issues of Karthik

This is especially useful for large polytomies as seen with SARS-CoV-2 trees. Retaining original leaf nodes positions is useful as an option.

Hello, I'm trying to add a recipe that requires header files from htslib and so I'm downloading it and compiling it in build.sh. When I test it locally using `circleci...

From @flaneuse : `searchLocations` would be MUCH more useful if there was a geographic synonym lookup function. If I try to lookup “USA” right now, I get no results. We...

enhancement

The api now contains a `geometry` column with `coordinates` and `type` sub fields. Plot maps using this without the need to download shapefile or do geojoins.

enhancement

Vignette `.Rmd` would have to be moved into the `vignettes/` directory. In addition, would be nice to edit the `DESCRIPTION` file to include a link to the vignette.

documentation

For getAdmn2ByState, getCountryByRegion, getAdmn1ByCountry, etc. provide another example where you supply the function with a list of location names rather than a string.

documentation

A tooltip on epidemic curve would allow users to see the numbers on a certain date. ![image](https://user-images.githubusercontent.com/798263/112394727-6f0f2000-8cba-11eb-8ab9-2618f9e9a0df.png)

enhancement

AY.22 has no mutations above 75% in the E gene. In this case, no label is shown. ![image](https://user-images.githubusercontent.com/798263/134575768-043bba2a-a251-4365-8bdc-1985e91f2173.png) Reducing the threshold to 0.5% shows 1 mutation in the lineage and...

bug

On hover over the exclamation mark on situation report home page, a warning is shown. However, this warning is not shown when hovering over it in the lineage comparison page....

Add optional parameter to cumulative prevalence end points: `start_date` and `end_date`. Can function as follows, | start_date | end_date | computed window | |:--|:--|:--| | None | None | `ndays`...

enhancement