Items not migrated when performing GHEC > GHEC w/EMU repo migration

[toddoconnor]

Description

In spot checking GHEC > GHEC w/EMU repo migrations I have discovered that the following items are not migrated.

• Custom Team & member roles (settings/role_details)
• Protected Tags (settings/tag_protection)
• Disabled webhooks (known - see #411 )
• notifications (settings/notifications)
• Secrets under both Actions and Dependabot
• Environments (settings/environments) other than GH Pages which is migrated
• Autolink references (settings/key_links)
• Discussions
• Actions settings (custom Artifact and log retention setting - not migrated)
• Deploy keys
• Some General settings missed
  • Require contributors to sign off on web-based commits
  • Default to PR title for squash merge commits
• Pinned Repository (if a repo was pinned on the source, it is not on the target) (this is an Org setting so understood why this is missing)

Reproduction Steps

I am an Org owner on both the source and target Orgs. Both PATs have all scopes selected. Using a generated script to perform the repo migrations. Spot check the target repo and see what is missing/different from the source repo.