giovannaVeiga

Hi everyone, I tried to run TOGA using my data and the following command (./toga.py human_mesbid/human.mesbid.final.chain human_mesbid/hg38.wgEncodeGencodeCompV34.bed human_mesbid/hg38.2bit human_mesbid/mesbid.modified.2bit --kt --pn human_mesbid_out -i human_mesbid/hg38.wgEncodeGencodeCompV34.isoforms.txt --u12 human_mesbid/hg38.U12sites.tsv --ms --cjn 32 --cb...

Hi everyone, Do you think I can run make lastz chains in fragmented genomes? One has 757 scaffolds and the other has 60,750. I already used RAGTAG to improve the...