Gert Hulselmans
Gert Hulselmans
It looks more that `frawk` does not execute the update condition for the next iteration of the loop: ```bash frawk ' BEGIN { for (i = 0 ; i <...
`continue` with plain `for` loop from above skips update condition: ```awk $ frawk ' BEGIN { for (i = 0 ; i < 10 ; i += 1) { if...
@andrewchambers It is fixed in my `updated_frawk` branch (together with several other fixes): https://github.com/ghuls/frawk/pull/new/updated_frawk
The Polars_1xx branch should have this fixes (and a lot of other Polars syntax updates: https://github.com/aertslab/pycisTopic/tree/polars_1xx https://github.com/aertslab/pycisTopic/commit/9892252c0b364e9b16ff0c1d56dbc29fcdb65056 https://github.com/aertslab/pycisTopic/commit/ca9b230651c59b1cc4719cf42840554bbb733638 Tutorials still need to be updated.
Looks like there is a breaking change in `maturin` downgrade to `maturin 1.7.8` for now: https://github.com/PyO3/maturin/issues/2416
Or you can clone the bigtools repo and apply this patch and install pybigtools from the patched version: https://github.com/jackh726/bigtools/pull/68 Update: Building from bigtools master branch should work now.
```bash git clone https://github.com/aertslab/pycisTopic cd pycisTopic git checkout polars_1xx pip install --no-deps . ``` `find_diff_features` is now also rewritten in the new pycistopic_v3 branch: https://github.com/aertslab/pycisTopic/commits/pycistopic_v3/, which makes is much faster...
@jackh726 I build most rust software with [cargo zigbuild](https://github.com/rust-cross/cargo-zigbuild) to target older glibc versions (2.17 in this case). Musl builds are in general way slower if progams do a lot...
The amount of memory used by Mallet can be controlled by the `-m` parameter. ```bash $ pycistopic topic_modeling mallet run --help usage: pycistopic topic_modeling mallet run [-h] -i MALLET_CORPUS_FILENAME -o...
@teng-gao how much memory does the machine have that you try to run Mallet on? 3000-cell dataset (25k regions) is a very small dataset. A few GB of RAM should...