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A mitoVGP Docker container?

Open junaruga opened this issue 3 years ago • 2 comments

Hello, Is there a Docker container for the mitoVGP somewhere? It is such as https://biocontainers.pro/tools/mitohifi. This one? https://hub.docker.com/r/remiolsen/mitovgp/tags Thank you.

junaruga avatar Sep 03 '22 18:09 junaruga

Hello @junaruga, unfortunately when we developed mitoVGP docker was not yet a thing :-) So, no there isn't, only Conda.

gf777 avatar Nov 03 '22 16:11 gf777

Thanks for the answer.

So, no there isn't, only Conda.

OK. I assume that "only Conda" means that users require the conda command to install MitoVGP from this repository source, reading the README.md. As a tip, if you create a conda "package" (bioconda) that is for you to upload the MitoVGP's source package to the conda's repository, then the docker container will be automatically created from the conda package.

E.g.

  • https://anaconda.org/bioconda/hifiasm (conda package in bioconda)
  • https://biocontainers.pro/tools/hifiasm (the docker container, this is automatically created.)

junaruga avatar Nov 03 '22 16:11 junaruga