AbPyTools

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No module named 'abpytools.core.formats.chain_pb2'

1

getting this error during install via pip or source: ====================================================================== ERROR: features_tests_composition (unittest.loader._FailedTest) ---------------------------------------------------------------------- ImportError: Failed to import test module: features_tests_composition Traceback (most recent call last): File "/home/misha/anaconda3/lib/python3.7/unittest/loader.py", line 154,...

m-abyzov

KeyError: 'X'

1

``` File "/home/misha/anaconda3/lib/python3.6/site-packages/abpytools/core/chain.py", line 71, in load_from_string new_chain.load() File "/home/misha/anaconda3/lib/python3.6/site-packages/abpytools/core/chain.py", line 92, in load self.load() File "/home/misha/anaconda3/lib/python3.6/site-packages/abpytools/core/chain.py", line 101, in load self.hydrophobicity_matrix = self.ab_hydrophobicity_matrix() File "/home/misha/anaconda3/lib/python3.6/site-packages/abpytools/core/chain.py", line 217, in ab_hydrophobicity_matrix...

m-abyzov

I have next code: ``` for sequence_alignment in sequences: chain = Chain.load_from_string(sequence=sequence_alignment) cdrs = dict() try: for cdr_name, cdr_indexes in chain.cdr[0].items(): cdrs[cdr_name] = sequence_alignment[cdr_indexes[0]:(cdr_indexes[-1] + 1)] except Exception as error:...

m-abyzov