SignatureAnalyzer

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Missing plot_results argument in CLI

2

I have been running Signature Analyzer as part of a workflow and the process fails (value error: zero-size array ...) in the plotting section despite ARD completing successfully for certain...

madisonjordan

ValueError

3

``` (base) [yihsiao@pathlab-ap-ps3a CCRCC_glycoproteomics_analysis]$ signatureanalyzer -n 10 \ > -t matrix \ > --objective gaussian \ > --max_iter 30000 \ > --prior_on_H L1 \ > --prior_on_W L1 \ > ./result/glyco_signature_analyzer.tsv...

hsiaoyi0504

ValueError: zero-size array to reduction operation minimum which has no identity

3

Hi, Thanks a lot for the amazing tool. I was running the version 0.0.8 on the example spectra from the repo. However, I get the following error. I presume the...

itsvenu

Hello Getz Lab, I was wondering if version 0.0.8 has been officially released, and if so, will it be available on pip? Thank you for your hard work.

madisonjordan

Add custom colormap option for signature figures; expand past ten signatures.

shankara-a

Incorrect shapes

1

Job errored out while writing results: ``` /var/spool/slurm/d/job15231496/slurm_script: 8: /var/spool/slurm/d/job15231496/slurm_script: source: not found /home/nicholas/miniconda3/envs/mutsig/lib/python3.6/site-packages/sklearn/ensemble/weight_boosting.py:29: DeprecationWarning: numpy.core.umath_tests is an internal NumPy module and should not be imported. It will be removed...

njbernstein

err and out. files: ``` --------------------------------------------------------- ---------- S I G N A T U R E A N A L Y Z E R ---------- --------------------------------------------------------- * Creating output dir...

njbernstein

Check automatically if any NaNs are present in matrix. If so, raise exception with description.

shankara-a

Heatmap error: ValueError: zero-size array to reduction operation minimum which has no identity

1

After issue #4 was fixed, the ARD completes successfully but get a similar error at the Heatmap drawing phase: > * Saving report plots to /path/to/output/dir > Traceback (most recent...

bknisbac

TypeError: Passing a dict as an indexer is not supported. Use a list instead.

2

Sorry for making a duplicate post, I wasn't sure if [this](https://github.com/getzlab/SignatureAnalyzer/issues/51) issue was still being monitored. I am having the same issue with the same version of python and pandas....

d-henness