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Published 20 hours ago • verified publisher icon geronimp

create seems to generate a new HMM even if one is given?

Open wwood opened this issue 9 years ago • 1 comments 

uqbwoodc@curtin:20160131:/srv/projects/abisko/shotgun_abundance/103_contig_tree_relative_abundances/1_test$ ~/git/graftM/bin/graftM create --output 2.16.ribosomal_protein_S5.autotax.gpkg --sequences 2.16.ribosomal_protein_S5.gpkg/2.16.ribosomal_protein_S5_seqs_clus_97.faa --rerooted_tree tree --hmm 2.16.ribosomal_protein_S5.gpkg/graftmpuZ5Di_search.hmm --verbosity 5 --taxonomy /tmp/mytax2

Using this command (and I presume any other like it), seems to run mafft and hmmbuild - why?

wwood avatar Jan 31 '16 11:01 wwood

I ran into the same issue, was this resolved?

adityabandla avatar Oct 23 '19 16:10 adityabandla