Xiao Guo 2208401002

icon company Guangxi University icon location Guangxi China icon location Bioinfomatics

Results 3 issues of Xiao Guo 2208401002

tensorflow ERROR while NVIDIA Container Toolkit is working properly

I0407 10:26:52.695398 139753170155328 run_docker.py:113] Mounting /data/ppi/A100 -> /mnt/fasta_path_0 I0407 10:26:52.695593 139753170155328 run_docker.py:113] Mounting /data/alphafold/uniref90 -> /mnt/uniref90_database_path I0407 10:26:52.695678 139753170155328 run_docker.py:113] Mounting /data/alphafold/mgnify -> /mnt/mgnify_database_path I0407 10:26:52.695742 139753170155328 run_docker.py:113] Mounting /data/alphafold...

setup

How to evaluate the confidence of a multimer ？

3 comment

Dear developer. Thank you for ESM and ESMFold! The AlphaFold-multimer program generate the iptm & ptm score to evaluate the confidence of prediction multimers，but ESMFold only generate pLDDT & pTM...

How to generate/extract .pkl file when using ESMFold multimer modeling？

Dear developer. Thank you for ESM and ESMFold! As we can see, some ESM application (i.e. ESM Structural Split Dataset) have .pkl file available，but how to generate/extract .pkl file when...