Cloudgene

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

Features

• :wrench: Build your analysis pipeline in your favorite language or use Hadoop based technologies (MapReduce, Spark, Pig)
• :page_facing_up: Integrate your analysis pipeline into Cloudgene by writing a simple configuration file
• :bulb: Get a powerful web application with user management, data transfer, error handling and more
• :star: Deploy your application with one click to any Hadoop cluster or to public Clouds like Amazon AWS
• :cloud: Provide your application as SaaS to other scientists and handle thousands of jobs like a pro
• :earth_americas: Share your application and enable everyone to clone your service to its own hardware or private cloud instance

Requirements

You will need the following things properly installed on your computer.

• Java 8 or higher
• Hadoop (Optional)
• Docker (Optional)
• MySQL Server (Optional)

Installation

You can install Cloudgene via our install script:

mkdir cloudgene
cd cloudgene
curl -s install.cloudgene.io | bash

Test the installation with the following command:

./cloudgene version

We provide a Docker image to get a full-working Cloudgene instance in minutes without any installation.

Getting started

The hello-cloudgene application can be installed by using the following command:

./cloudgene github-install lukfor/hello-cloudgene

The webserver can be started with the following command:

./cloudgene server

The webservice is available on http://localhost:8082. Please open this address in your web browser and enter as username admin and as password admin1978 to login.

Click on Run to start the application.

A job can be started by filling out the form and clicking on the blue submit button. The hello-cloudgene application displays several inspiring quotes:

The documentation is available at http://docs.cloudgene.io

More examples can be found in genepi/cloudgene-examples.

Cloudgene and Genomics

See Cloudgene in action:

• Michigan Imputation Server
• mtDNA Server
• Laser Server

Developing

More about how to build Cloudgene from source can be found here.

Contact

• Lukas Forer @lukfor
• Sebastian Schönherr @seppinho

License

Cloudgene is licensed under AGPL-3.0.