obographs

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We have converters the other way around. Would this be at all possible with the current API? @julesjacobsen

matentzn

What is the canonical captialisation of OBO Graphs?

5

1. OBO Graphs 2. OBO-Graphs 3. OBOGraphs 4. OboGraphs 5. obographs 6. obo-graphs Thank you.

matentzn

When I use ROBOT’s convert function to turn an ontology into OBO Graph JSON (which in turn is based on the code in this repository), how do I know which...

cthoyt

merge in linkml repo

1

@sierra-moxon made: https://github.com/biodatamodels/obograph Should we merge repos? I think the options are 1. monorepo, covering spec, java data model, java conversion from owl code, python datamodel, json-schema, linkml schema, autogen...

cmungall

Bumps [jackson-databind](https://github.com/FasterXML/jackson) from 2.12.1 to 2.12.6.1. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter...

dependabot[bot]

Add a CLI for converting OWL -> JSON

8

julesjacobsen

EDAM.owl throwing an exception

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I'm trying to convert [EDAM.owl](http://edamontology.org/page#Download) _(Always the latest stable version, in OWL format)_ into JSON format using [ROBOT](http://robot.obolibrary.org) which in turn is calling the obographs library. Obographs throws a `NullPointerException`...

hrshdhgd

Bumps [guava](https://github.com/google/guava) from 28.2-jre to 29.0-jre. Release notes Sourced from guava's releases. 29.0 Maven <dependency> <groupId>com.google.guava</groupId> <artifactId>guava</artifactId> <version>29.0-jre</version> <!-- or, for Android: --> <version>29.0-android</version> </dependency> Javadoc 29.0-jre 29.0-android JDiff 29.0-jre...

dependabot[bot]

Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1. Release notes Sourced from junit's releases. JUnit 4.13.1 Please refer to the release notes for details. JUnit 4.13 Please refer to the release notes...

dependabot[bot]

Bumps commons-io from 2.2 to 2.7. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...

dependabot[bot]