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geneontology
The Gene Ontology Helpdesk
## Describe the issue/bug This PomBase annotation appears to be missing from Amigo, any ideas why? PomBase SPCC663.12 cid12 involved_in GO:0043631 GO_REF:0000050 ISM Pfam:PF03828 P poly(A) polymerase Cid12 csp10|csp8 protein...
## Describe the issue/bug http://snapshot.geneontology.org/reports/pombase-report.html SUMMARY This report generated on 2023-01-03 Associations: 41618 Lines in file (incl headers): 44572 Lines skipped: 2949 A clear and concise description of what the...
I have been asked by the Elixir focus group to provide a short statement about curation training as part of a "gap analysis" for the Elixir training platform. I first...
Hi, I've been using the GO API that is published here - http://api.geneontology.org/api - but am having some basic issues with the results. Not sure if it's an issue with...
## Describe the issue/bug I was not sure which tracker to put this on so beginning with helpdesk. InterMIne is loading pombe data for a pombeMIne However, Intermine treats the...
This was emailed through helpdesk, but there appear to be at least a few different things to be addressed so this ticket can be moved/duplicated as appropriate. > Hello, >...
## Is there a new GPAD version (1.2)? I do not see GPAD version 1.2 documented at http://geneontology.org/docs/gene-product-association-data-gpad-format/ GPAD version 1.2 is found in .gpad annotation files from http://current.geneontology.org/annotations/. GPAD...
## Describe the issue/bug We used to get regulation inferences from the ontology shapshot, but this no longer seems to be the case. ## Expected behavior Here is a good...
We had a user write in with a series of ontology questions that do not appear to be addressed in our help docs. They include: - [ ] My questions...
**Please describe your question, idea, or concern.** Dear GO team, I have a question about the 'Date' field in GAF files. While looking through human GAF files (goa_human.gaf downloaded from...
