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geneontology
Feature request: Easy to find OWL data for a single GO term
For example I would like to see the OWL modeling of the term GO:0006040 easily from the term page.
While I would like OWL in any of the RDF syntaxes plus manchester, others would want OBO and some JSON thingy.
@JervenBolleman you can find this in the OLS view: https://www.ebi.ac.uk/ols4/ontologies/go/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FGO_0006040
It would be nice for us to have a link there from Amigo. What do you think of that @kltm?
Oh I see, you would like a machine-readable download per term? I was thinking you just wanted to see the OWL modeling, which on that page is in Manchester syntax (in HTML).
@balhoff yes (although in my case it is for human consumption). The OWL model is so incomplete that I had not considered it. Basically I wanted to see how term Y regulates term X was modeled so that I can use it a query.
@JervenBolleman can you say more about what you would want to see for a particular term that would be more complete? OLS has its equivalent class expression as well as its superclasses. Are you interested in a bigger picture of the OWL modeling in GO? Just trying to understand what would be useful. We have some OWL design patterns described here: https://github.com/geneontology/go-ontology/blob/master/docs/patterns/index.md For example this is the regulation pattern: https://github.com/geneontology/go-ontology/blob/master/docs/patterns/regulation.md
For me I often look at example entries to see what exists. Things that I might not have thought about even being possible or too look for in a manual. Especially around annotations on the go terms. Also to verify my understanding of how such a nicely documented pattern expands once used with a term.