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geneontology
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
Source: ``` ✗ curl -L -s https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gaf.gz | gzip -dc | grep URS000075D95B_9606 | cut -f2,3,9-12 URS00004176D4_9606 URS00004176D4_9606 F Homo sapiens (human) hsa-miR-185-5p miRNA URS000075D95B_9606 URS000075D95B_9606 F Homo sapiens (human)...
Hello, @alexsign /GOA is now producing 'combined' files for Human, chichen, dog, pig, cow files, containing all Swiss-Prot isoforms, (_not_ the TrEMBL isoforms), complexes, and RNAs. The links are here:...
_From @vanaukenk on December 19, 2016 14:32_ Hi, Following on from a help desk ticket: http://jira.geneontology.org/browse/GO-1431 Can we explore adding a QC check for annotations to retracted publications? A possible...
Hi @mugitty According to @dustine32 , gorule-0000057 was never implemented (see https://github.com/geneontology/go-site/issues/1553), but it's showing up in reports, see http://current.geneontology.org/reports/assigned-by-gorule-report.html Can you please remove it from the pipeline? Thanks, Pascale
Need to first check with curators /QC group. @vanaukenk @ValWood @sylvainpoux @selewis
The previous work in the MGI remainders project concentrated on the GPAD 2.0 output, which is what MGI will pick up--no need for the GPI as they are the SoT....
The new version of ontobio that @sierra-moxon has been working on is almnost completely compatible with what we currently use, but defaults to 2.0. We would like to not do...
Our main metadata currently points to the "old" MGI-provided upstreams. Switch to our new / internal files.
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A collection of metadata, tools, and files associated with the Gene Ontology public web presence.