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Missing parent: group translocation activity

Open hattrill opened this issue 10 months ago • 3 comments

  • GO term ID and label for which you request a new superclass

GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity

  • New superclass (parent) suggested group translocator activity or perhaps group translocation activity

  • definition Enables the transfer of a substance from one side of a membrane to the other where the substrate is modified as part of the transport process.

is_a GO:0022857 transmembrane transporter activity

  • Reference(s) PMID:16707683 Example malP Bacillus subtilis UniProtKB:P54715

  • xref xref TC:4

As part of #27495

hattrill avatar Apr 03 '24 14:04 hattrill

Remove is_a active transmembrane transporter activity parent relation for GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity

hattrill avatar Apr 22 '24 11:04 hattrill

Hi @hattrill Why not call the grouping term something like 'phosphoenolpyruvate-dependent phosphotransferase system activity? See a newer review https://pubmed.ncbi.nlm.nih.gov/2832233/

pgaudet avatar Apr 22 '24 15:04 pgaudet

Hi @pgaudet

They could have that as a parent would map to the TC4.A https://tcdb.org/search/result.php?tc=4.A, but that term would ideally have the parent 'group translocator activity' parent to fit with the TC system for TC4 https://tcdb.org/search/result.php?tc=4

hattrill avatar Apr 22 '24 17:04 hattrill