go-annotation

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Review annotations to GO:0043491 pkb signaling

20

GO:0043491 protein kinase B signaling Annotations + extensions are here: https://docs.google.com/spreadsheets/d/1u9Mo1LQnHVOI88CYNDKhKL2csszugGRLKkZZDicVqWY/edit#gid=653397601

pgaudet

Review annotations to GO:0000003 reproduction terms (with replacements)

3

Dear all, The proposal has been made to obsolete GO:0000003 reproduction GO:0032504 multicellular organism reproduction GO:0032505 reproduction of a single-celled organism see https://github.com/geneontology/go-ontology/issues/27054. Experimental annotations that need to be reviewed...

raymond91125

Queried 2024-02-12 https://docs.google.com/spreadsheets/d/1bd-kQeMFbiwTu48vf1Zpy1tus2vLPkjN9dU1dzxcG2U/edit#gid=0

pgaudet

I was checking annotation intersection checks, and I see MEX67 nuclear export receptor is annotated to "porin activity" @suzialeksander @edwong57 could you take a look? thanks v

ValWood

Review annotations to some intracellular signaling pathways

7

Dear all, The proposal has been made to obsolete GO:0038008 TRAF-mediated signal transduction (https://github.com/geneontology/go-ontology/issues/26498) GO:0019932 second-messenger-mediated signaling (https://github.com/geneontology/go-ontology/issues/26503) GO:0071848 positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling and...

pgaudet

**Intracellular cassettes** - [ ] cAMP/PKA signal transduction - [ ] calcineurin-mediated signaling - [ ] CAMKK-AMPK signaling cascade - [ ] canonical NF-kappaB signal transduction - [ ] nitric...

pgaudet

Dear all, These two terms seem equivalent: GO:0055056 D-glucose transmembrane transporter activity GO:0005355 glucose transmembrane transporter activity see https://github.com/geneontology/go-ontology/issues/27326 Experimental annotations that need to be reviewed are here: [LINK TO...

pgaudet

Dear all, The proposal has been made to obsolete GO:0052665 tRNA (uracil-2'-O-)-methyltransferase activity see https://github.com/geneontology/go-ontology/issues/26016 Experimental annotations that need to be reviewed are here: [LINK TO ANNOTATION REVIEW GOOGLE SPREADSHEET...

pgaudet

Review annotations to GO:0035553 'oxidative single-stranded RNA demethylation' and GO:0035552 'oxidative single-stranded DNA demethylation'

3

GO:0035553 'oxidative single-stranded RNA demethylation' GO:0035552 'oxidative single-stranded DNA demethylation' see https://github.com/geneontology/go-ontology/issues/26935

pgaudet

Add report in 'direct_annot_to_list_of_terms' and 'reg_ann_to_list_of_terms' to include a group with ECO_0000204

5

We would like to add another report in the GH actions triggered by the labels `direct_ann_to_list_of_terms` and `reg_ann_to_list_of_terms` to also include TAS and NAS? We end up missing Reactome (TAS)...

pgaudet