go-annotation

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Review annotations to oligosaccharyltransferase complex subtypes

1

Dear all, The proposal has been made to obsolete GO:0034998 oligosaccharyltransferase I complex GO:0034999 oligosaccharyltransferase II complex GO:0035000 oligosaccharyltransferase III complex see https://github.com/geneontology/go-ontology/issues/28714. Experimental annotations that need to be reviewed...

raymond91125

Review annotations to some lipases

1

- GO:0102549 1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity - GO:0102259 1,2-diacylglycerol acylhydrolase activity - GO:0102258 1,3-diacylglycerol acylhydrolase activity - GO:0033878 hormone-sensitive lipase activity see https://github.com/geneontology/go-ontology/issues/28339

pgaudet

Review annotations to GO:0016401 palmitoyl-CoA oxidase activity and GO:0016402 pristanoyl-CoA oxidase activity

3

Dear all, The proposal has been made to obsolete GO:0016401 palmitoyl-CoA oxidase activity (no xrefs)- 4 EXP (rat Acox1, rat Acaa1a, mouse Acadl, human ACAA1) GO:0016402 pristanoyl-CoA oxidase activity (RHEA:40459)...

pgaudet

Checking what is annotated to GO:0044036 cell wall macromolecule metabolic process & children for this ontology ticket https://github.com/geneontology/go-ontology/issues/27960

pgaudet

ARBA00028584

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* **ARBA rule (ID and label):** ARBA00028584 * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPAC1296.04 * **Description of issue** reporting these because I am filtering them locally, but...

ValWood

Dear all, The proposal has been made to obsolete GO:0004028 3-chloroallyl aldehyde dehydrogenase activity ~GO:0008785 alkyl hydroperoxide reductase activity~ see https://github.com/geneontology/go-annotation/issues/5413 GO:0009389 dimethyl sulfoxide reductase activity GO:0034824 citronellyl-CoA dehydrogenase activity...

pgaudet

Review annotations to GO:0008785 alkyl hydroperoxide reductase activity

2

Dear all, The proposal has been made to obsolete GO:0008785 alkyl hydroperoxide reductase activity (replaced by GO:0102039 NADH-dependent peroxiredoxin activity). see https://github.com/geneontology/go-ontology/issues/28340 Experimental annotations that need to be reviewed are...

raymond91125

PTN000209009

1

* **PTHR ID & PTN node:** S. pombe has 8 amino acid transporter family members annotated to gamma-aminobutyric acid transmembrane transporter which seems unlikely. (especially since by most methods TPO5...

ValWood