go-annotation

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Check annotations to signaling involved in x

28

The proposal has been made to obsolete terms with the pattern 'signaling involved in x', see https://github.com/geneontology/go-ontology/issues/25766 Note that it is possible that some terms here are valid; please review...

pgaudet

Review annotations to GO:0004697 diacylglycerol-dependent serine/threonine kinase activity

9

GO:0004697 diacylglycerol-dependent serine/threonine kinase activity - we don't plan to obsolete this term, but we'd like to make is a 'do not annotate'

pgaudet

Review annotations to GO:0000422 autophagy of mitochondrion (and descendants)

11

Dear all, The proposal has been made to obsolete GO:0000422 autophagy of mitochondrion GO:1903146 regulation of autophagy of mitochondrion GO:1903147 negative regulation of autophagy of mitochondrion GO:1903599 positive regulation of...

ValWood

Ontology ticket: https://github.com/geneontology/go-ontology/issues/26003 GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator GO:1902163 | negative regulation of DNA damage response, signal...

pgaudet

Review annotations to children and regulation terms of (subtype) chitin metabolic process

3

Dear all, The proposal has been made to obsolete GO:0006037 cell wall chitin metabolic process GO:0006034 cuticle chitin metabolic process GO:0006035 cuticle chitin biosynthetic process GO:0006036 cuticle chitin catabolic process...

raymond91125

Review annotations to GO:0033201 alpha-1,4-glucan synthase activity

1

Dear all, The proposal has been made to obsolete GO:0033201 alpha-1,4-glucan synthase activity and replace it with GO:0033840 alpha-1,4-glucan glucosyltransferase (NDP-glucose donor) activity (note the new term name). see https://github.com/geneontology/go-ontology/issues/28271....

raymond91125

GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity IBA with S000004666 , PTN000559455

3

* **PTHR ID & PTN node:** GO:0004042 | acetyl-CoA:L-glutamate N-acetyltransferase activity | IBA with S000004666 , PTN000559455 * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/term/GO:0004042 I have 2...

ValWood

GO:0071514 genetic imprinting

pgaudet

Review annotations to some Toll terms

1

'TRAM-dependent toll-like receptor 4 signaling pathway' GO:0035669 'TRAM-dependent toll-like receptor signaling pathway' GO:0035668 'TRIF-dependent toll-like receptor 4 signaling pathway' GO:0035667 'TRIF-dependent toll-like receptor signaling pathway' GO:0035666 'MyD88-dependent toll-like receptor 2...

pgaudet

SynGO term annotations - report

1

GO:0140235 GO:0140233 GO:0140232 GO:0099564 GO:0140239 GO:0140238 GO:0140249 GO:0140247 GO:0140246 GO:0099546 GO:0098987 GO:0099576 GO:0099575 GO:0099574 GO:0150035 GO:0150036 GO:0140245 GO:0099578 GO:0140244 GO:0099577 GO:0140243 GO:0099547 GO:0140252 GO:0140251 GO:0140250 GO:0099083 GO:0098925 GO:0099183 GO:0099556 GO:0099553...

pgaudet