go-annotation

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Devise SOP for using annotation matrix for QC

2

Explore ways of using Val's matrix (now on AmiGO) to spot possibly problematic areas of annotation or ontology.

vanaukenk

KW-0409

17

pombe fxn1 is picking up a mapping to cellular iron ion homeostasis KW-0409 I think to the best of current knowledge this protein is involved in iron-sulfur cluster assembly, it...

Antonialock

Review annotations to GO:0044218 other organism cell membrane

2

Hello, The proposal has been made to obsolete GO:0044218 other organism cell membrane. Please review your annotations and rehouse if appropriate: https://docs.google.com/spreadsheets/d/1NZ6-lK_X4XuzL4ScQ-RclPIm5xcQI8jW2S0wGBp9cms/edit#gid=0 Impacted groups ---- CAFA: 2 annotations UniProt: 12...

pgaudet

I've made a list of annotations to BP modules with suboptimal GO terms. Hopefully there are often better experimental annotations that we can use in the evolutionary models instead, but...

thomaspd

SPKW DNA binding

2

hi @sylvainpoux Let's do this one next. I don't think these should map to DNA binding. Val KW-0238 no evidence for DNA binding DNA binding S.pombe P36627 translational activator DNA...

ValWood

Review annotations to activity involved in x - transporters - second batch

2

GO:0086060 voltage-gated sodium channel activity involved in AV node cell action potential GO:0086062 voltage-gated sodium channel activity involved in Purkinje myocyte action potential GO:0086063 voltage-gated sodium channel activity involved in...

pgaudet

NCBI Linkout to contact authors to review annotations from their papers.

1

Review whether necessary infrastructure is in place. Discussion: we could also use other mechanisms -

pgaudet

Documentation - MOD pipelines

1

We need MODs to (1) document their pipeline and (2) promote the file available from GO as the file to download instead of the MOD specific file

pgaudet

* **UniProt KeyWord (ID and label):** GO:0004527 | exonuclease activity | IEA with KW-0269 * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPCP31B10.05 * **Description of issue** is a...

ValWood

Incorrect Unirule mapping: UR000107549

2

**UniProt UniRule (ID and label):** GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA with UR000107549 GO_REF:0000104 43 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA...

ValWood