amigo

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Display experimental data first

5

In AmiGO it would be really nice if experimental data was shown first, followed by inferences: http://amigo.geneontology.org/amigo/term/GO:0140274 It often looks as though everything is IEA and the interesting experimental stuff...

ValWood

fix zfin links to no longer use ZFIN_jump

2

https://agr-jira.atlassian.net/browse/AGR-1350 http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-020724-1 should use: http://identifiers.org:ZFIN:ZDB-PUB-020724-1 if the organization is known (for the ZFIN curie prefix) or http://zfin.org/ZDB-PUB-020724-1 if not (but I think we always know): should handle all other cases,...

nathandunn

Add ribbon display as option on gene pages

27

Will help if needed. Package is here: https://www.npmjs.com/package/@geneontology/ribbon and code is right next door.

selewis

Add schema.org structured data to AmiGO pages where appropriate

9

This is metadata for pages that would allow better crawling and display from Google (and possible others). For reference, see: https://agr-jira.atlassian.net/browse/AGR-1160 https://search.google.com/structured-data/testing-tool/u/0/ https://developers.google.com/search/docs/guides/sd-policies Tagging @nathandunn

kltm

please tell us which term page....

1

 clicking on the link to gene products takes you to this page  but nowhere on this page does it tell you which term you...

ValWood

Get unit tests working again

1

Currently, some unit tests are failing in AmiGO. The closure of this item will be cleaning and reforming the tests so that `gulp test` passes.

kltm

Bulk access to documents using bulk input

36

The bulk download of annotations with gene product input is an occasionally used feature of AmiGO 1.x that I suspect might be missed. The easiest implementation would be a series...

kltm

When creating the more strict queries, the driver for the manager tries to inject more narrow fields for the search. For example, checking `bioentity_label` will create an addition `q` element...

kltm

Gramene appears to have duplicated entries

13

 I m not sure at which step the merge of these two entries is not done. Thanks, Pascale

pgaudet

Amigo pages and annotations to show for a GO-term

8

If we consider these two pages corresponding to a same GO-term: * http://amigo.geneontology.org/amigo/search/annotation?q=GO:0007275 * http://amigo.geneontology.org/amigo/term/GO:0007275 I have a few comments and questions: * the number of annotations should be the...

lpalbou