amigo

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Removal of db-xrefs.yaml in amigo

15

Several reasons: * duplicate of go-site/db-xrefs.yaml (source of truth) * i thought the ZFIN issue with the ribbon was solved after a PR on go-site a long time ago: https://github.com/geneontology/go-site/pull/1048...

lpalbou

Bumps [jquery](https://github.com/jquery/jquery) from 3.3.1 to 3.5.0. Commits 7a0a850 3.5.0 8570a08 Release: Update AUTHORS.txt da3dd85 Ajax: Do not execute scripts for unsuccessful HTTP responses 065143c Ajax: Overwrite s.contentType with content-type header...

dependabot[bot]

Bumps [jquery](https://github.com/jquery/jquery) from 3.3.1 to 3.5.0. Commits 7a0a850 3.5.0 8570a08 Release: Update AUTHORS.txt da3dd85 Ajax: Do not execute scripts for unsuccessful HTTP responses 065143c Ajax: Overwrite s.contentType with content-type header...

dependabot[bot]

Allow search ordering, or have a sensible default search ordering on some fields

5

Its a bit irritating when you get to Amigo and the first annotations you see are IEA or IBA. Could the experimental IDs show first be default? That would be...

ValWood

User confusion in the neighborhood view; make note of indirect and direct relations

20

Whilst PomBase were looking at this (mainly to find a way to display neighbouring terms in Canto), we thought this looked a little odd. 

ValWood

Matrix rules, some exceptions being ignored

1

RUles have GO:0006520. GO:0006281 PANTHER:PTHR10277 but these are reported as violations: GO:0006520 && GO:0006281 LYS20 Homocitrate synthase isozyme and functions in DNA repair DNA repair SGD Saccharomyces cerevisiae S288C IGI...

ValWood

Duplicate annotations

54

Hello, I don't know if similar cases have been reported (I thougth previous reports had more to do with redundant but distinct annotations). These appear completely identical  (one with...

pgaudet

Some species seem to pass through the taxon filter

8

I still see these when I filter on fungi? 

ValWood

Create link outs to ECO pages for evidence codes

2

For annotation tables, it would be nice to link out to ECO for each of the evidence codes. Right now, there is just text with no way for users or...

vanaukenk

AmiGO linker is not resolving Xenbase or ECO

4

@kltm @tmushayahama @vanaukenk See: https://github.com/geneontology/go-site/issues/1206 For Xenbase, Malcolm doesn't see anything immediately wrong with the URL construct. For ECO, we don't actually have a URL in the db-xrefs.yaml, but should...

vanaukenk