rsofun
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geco-bern
Implements the Simulating Optimal FUNctioning framework for site-scale simulations of ecosystem processes, including model calibration. It contains Fortran 90 modules for the P-model, SPLASH, and Biom...
@lauramarques Remaining issues after merge: - [x] I corrected some erroneous annual cohorts output writing. But some remain. See compilation warnings. Please resolve them. - [ ] Update documentation of...
Continuous integration tests for BiomeE runs on Ubuntu sometimes throw an error (see for example [here](https://github.com/geco-bern/rsofun/actions/runs/7827490816/job/21355408200)): ``` *** caught segfault *** address 0x559f7bf30070, cause 'memory not mapped' Segmentation fault (core...
Comparing [BiomeE-Allocation](https://github.com/stineb/BiomeE-Allocation/blob/5b061f54cb605206ae41c3d91d9d08a3575d2471/model/src/vegetation.F90#L939), from where we've copied the code, shows that the mortality formulation was changed quite a bit. In particular, the factor deltat/seconds_per_year has been removed? @lauramarques
## prepare for release: - [x] Check CRAN issues ([ISSUES](https://cran.r-project.org/web/checks/check_results_rsofun.html)) - [x] Update DESCRIPTION - version increment! - [x] Update / check NEWS.md - [x] Update cran-comments.md for release -...
Adding demo dataset for BiomeE - based on PROFOUND
This is an example of how to simultaneously run the calibration for several sites (separately). ``` # Load data from Jiarui load("~/Downloads/settings.Rda") load("~/Downloads/driver.Rda") load("~/Downloads/obs.Rda") sitenames filter(sitename == x), settings =...
Add ci:ca (leaf internal to ambient CO2 concentration) as a traits target data. We can use this dataset: https://github.com/wcornwell/leaf13C - Filter `ps.type == "C3"` - Elevation should be obtained additionally...
Here I just list some possible improvements for the BiomeE implementation: - Set `nyeartrend` and `firstyeartrend` to match the available forcing data. Potentially, also `n`, `n_day` and `n_year`, which are...
@jaideep777 - [x] Resolve compilation error on M1 Mac (may test on a different platform with rhub checks, see below): ``` dlopen(/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-rsofun/00new/rsofun/libs/rsofun.so, 0x0006): symbol not found in flat namespace '___gcc_nested_func_ptr_created'...