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getMatrixSet is incompatable with JASPAR2024

1

I tried running ``` JASPAR2024

mossconfuse

I am trying to covert my PFMatrixList into PWMatrixList `toPWM(my_PFMatrixList) ` And I get the following error: Error in (function (classes, fdef, mtable) : unable to find an inherited method...

alkurowska

how to import a custom motif matrix

1

Hi,I have a common question: I want to import a custom motif matrix (such as :MEME)，but I don't know how to do it. Thank you!

HZAU-dl

Hi there! I am hoping to compare the binding affinity of a transcription factor using a known pwm. Basically asking, "is this motif over-represented in one sequence relative to another?"....

jtlovell

Hello, I am using a package called ArchR to do ATACseq analysis. ArchR uses TFBSTools to extract motifs. I noticed there is only 633 TF extracted from Jaspar, but I...

rojinsafavi

all_versions = FALSE in JASPAR omits results

3

Hi! I am trying this tool for the first time and I encountered the following issue. When I am accessing the PWMs of mouse (Tax ID: 10090) with the option...

nellykan

Hi everyone, it's not an issue but a discussion. I have a pfmlist object `head()` like this: ``` $M00373 [,1] [,2] [,3] [,4] [,5] [,6] [,7] A 0.4068930 0.57303098 0.976367797...

jiangpuxuan