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Published 20 hours ago • verified publisher icon gbouras13

Replace `hmmscan` with `hmmsearch`

Open valentynbez opened this issue 1 year ago • 0 comments

  • pharokka version: 1.6.1
  • Python version: 3.12.0

Description

hmmscan is slower than hmmsearch and might give false positive results, because p-value is corrected for the size of the HMM-database. In most applications using hmmsearch is advised.

valentynbez avatar Feb 09 '24 16:02 valentynbez