Camila Gazolla Volpiano comments

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                                            Camila Gazolla Volpiano

error running kreport2mpa.py script, name 'l_vals' is not defined.

Dear @simonleandergrimm, I used the release v1.1 and it worked! You can find it here: https://github.com/jenniferlu717/KrakenTools/releases/tag/v1.1 Any concerns about using this previous version to avoid that error @jenniferlu717? :) Thank...

extract_kraken_reads.py No reads processed

You sure to be using the right input? For example the file [sample].kraken instead of [sample].kraken.report?

incorporate MetaPhlAn 4

Hi @lwaldron, @seandavi, and team, I'm eagerly awaiting the MetaPhlAn 4 update and would like to know if there are any recent developments or a tentative timeline for its release....

Error in job reference_selection

Got the same error here. Does someone know how to fix this? Thank you!

Error in job reference_selection

@[AKBode](https://github.com/AKBode) try to check your mash version! I have updated mash to v.2.1 and it worked! :)

empty .biom files from normal-looking bracken reports?

Dear @smdabdoub, the same is happening with me. Here is an example file: [example_bracken_S250.report.txt](https://github.com/smdabdoub/kraken-biom/files/10575185/example_bracken_S250.report.txt)