Alexandre Gauvin

Files are overwritten on the second pass

1

When running bidskit for the second time using the following command, `bidskit -d {data_dir} -subj {subjects_to_convert} -sess {sessions_to_convert}` the file `participants.json` and `dataset_description.json` are overwritten, even if I've set them...

**Describe the bug** For CT Scan Dicoms that have tilt correction, *.json sidecar is not created. Hence, an error prevents dcm2niix and bidskit from continuing. **To Reproduce** Unfortunately, I cannot...

**Bug** I cannot debug bidskit while attempting to understand some errors. **To Reproduce** 1. Go to '$HOME/bidskit/bidskit' 1. Run `python __main__.py` 1. See error: ``` /home/algo/libs/bidskit/bidskit/__main__.py:38: DeprecationWarning: pkg_resources is deprecated...

Cannot handle huge command.txt files

7

Attached, an example file from a worker that had hard time... Further details to come tomorrow... @mgermain [770146_mp2_m_worker_105_e.txt](https://github.com/SMART-Lab/smartdispatch/files/222475/770146_mp2_m_worker_105_e.txt)