gaow

Thank you @BoPeng great to know that you know the source of the problem. I'll try myself for Jupyter Lab 3.x if it works i'll tell my colleagues to use...

During the past few days, both @dianacornejo and @danielnachun tried everything including installing via `pip` and `conda` on jjupyter-sos but still we don't get the cell level kernel menu. There...

are you refering to this file? https://github.com/vatlab/sos/blob/master/development/docker-notebook/Dockerfile and https://hub.docker.com/r/vatlab/sos-notebook/tags ? its from years ago. Not sure how relevant it is.

Here is what does not work, ``` ╰─ micromamba -n python_libs list | grep -P "sos|lab" warning libmamba 'root_prefix' set with default value: /Users/gw2411/micromamba jupyterlab 4.2.1 pyhd8ed1ab_0 conda-forge jupyterlab-lsp 5.1.0...

Thanks, glad we identified the cause of the issue now. We can either freeze our version for now until later we have a fix, or just hold on for the...

@BoPeng it works! However, if we have a very long command like this, ``` plink --bfile gwas_example_final --logistic hide-covar --covar gwas_example_final_pca.eigenvec --covar-number 1-10 --out gwas_example_final --ci 0.95 ``` then the...

@fabiennejh it would be very helpful if you could provide a minimal working example to us, including a very small vtools project, your customized R test script and the command...

@fabiennejh I cannot unzip the file you uploaded. Could you verify you can download it, unzip and be able to run vtools command on it?

We need the genotype database as well -- `*.proj` will not work.

@freedomq8 all association tests are nominal p-values. You can take them and do your own multiple testing control (Bonferroni or FDR)