GLUE
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gao-lab
Graph-linked unified embedding for single-cell multi-omics data integration
Hi, does PairedSCGLUEModel work in a way that it finds common `.obs_names` among all present modalities? Or is it also possible to use the paired model when e.g. integrating 3...
Hello, I have the error when running `guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac)` when using the data provided in the tutorial. The error stated `"sortBed" does not appear to be installed or...
 I have just configured the conda and when I try to run evaluation on GPU, I get the following error. Your guidance in...
### Problem Description The original `boxplot` function （`experiments/RegInf/utils.py`） was designed to create a box plot with marginal distributions. However, it contained a bug where the input `DataFrame`, `data`, was being...
Hello, when I use the scglue.data.lsi, it returned the error: Input contains NaN. Do you know how to figure out it? Thank you.
Hi, I wonder know if GLUE can generate cross modality data, like you have a pre-trained model, and if you can generate scATAC-seq data using the scRNA-seq data?
Hi, Thanks for developing scglue. When I want to use scglue.data.lsi(atac, n_components=100, n_iter=15), I get this error "ValueError: Found array with 0 feature(s) (shape=(4034, 0)) while a minimum of 1...
Hello! I would like to know whether GLUE has an implementation to perform query mapping of unlabeled data. I want to create a reference map with GLUE and be able...
Hello, Thanks for developing this great software. It has helped me a lot for integration of unpaired snRNA and snATAC. I recently run another dataset with my previous script following...
Hello, I have the error when running guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac) when using my dataset.  I will appreciate if you could help me to figure it out. Thanks!
